%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Contents: Specialities of the LaTeX system
% $Id: spec.tex 524 2014-08-11 11:34:38Z oetiker $
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\chapter{Specialities}
\begin{intro}
  When putting together a large document, \LaTeX{} will help
  with some special features like index generation,
  bibliography management, and other things.
  A much more complete description of specialities and
  enhancements possible with \LaTeX{} can be found in the
  {\normalfont\manual{}} and {\normalfont \companion}.
\end{intro}

\section{Including \EPSi{}}\label{eps}
\LaTeX{} provides the basic facilities to work with floating bodies,
such as images or graphics, with the \texttt{figure} and
\texttt{table} environments.

There are several ways to generate the actual
\wi{graphics} with basic \LaTeX{} or a \LaTeX{} extension package,
a few of them are described in chapter \ref{chap:graphics}.
Please refer to \companion{} and the \manual{} for more information on
that subject.

A much easier way to get graphics into a document is to generate them with a
specialised software package\footnote{Such as XFig, Gnuplot, Gimp, Xara X
\ldots} and then include the finished graphics in the document. Here
again, \LaTeX{} packages offer many ways to do this, but this introduction
will only discuss the use of \EPSi{} (EPS) graphics, because it is quite
easy to do and widely used.  In order to use pictures in the EPS format, you
must have a \PSi{} printer\footnote{Another
  possibility to output \PSi{} is the \textsc{\wi{GhostScript}}
  program available from
  \CTAN|support/ghostscript|. Windows and OS/2 users might
  want to look for \textsc{GSview}.} available for output.

A good set of commands for inclusion of graphics is provided in the
\pai{graphicx} package by D.~P.~Carlisle. It is part of a whole family
of packages called the ``graphics''
bundle.\footnote{\CTAN|pkg/graphics|}

When working on a system with a
\PSi{} printer available for output and with the \textsf{graphicx}
package installed, use the following step by step guide to
include a picture into your document:

\begin{enumerate}
\item Export the picture from your graphics program in EPS
  format.\footnote{If your software cannot export into EPS format, you
    can try to install a \PSi{} printer driver (such as an Apple
    LaserWriter, for example) and then print to a file with this
    driver. With some luck this file will be in EPS format. Note that
    an EPS must not contain more than one page. Some printer drivers
    can be explicitly configured to produce EPS format.}
\item Load the \textsf{graphicx} package in the preamble of the input
  file with
\begin{lscommand}
\verb|\usepackage[|\emph{driver}\verb|]{graphicx}|
\end{lscommand}
\noindent where \emph{driver} is the name of your ``dvi to \PSi{}''
converter program. The most
widely used program is called \texttt{dvips}. The name of the driver is
required, because there is no standard on how graphics are included in
\TeX{}. Knowing the name of the \emph{driver}, the
\textsf{graphicx} package can choose the correct method to insert
information about the graphics into the \eei{.dvi}~file, so that the
printer understands it and can correctly include the \eei{.eps} file.
\item Use the command 
\begin{lscommand}
\ci{includegraphics}\verb|[|\emph{key}=\emph{value}, \ldots\verb|]{|\emph{file}\verb|}|
\end{lscommand}
\noindent to include \emph{file} into your document. The optional parameter
accepts a comma separated list of \emph{keys} and associated
\emph{values}. The \emph{keys} can be used to alter the width, height
and rotation of the included graphic. Table~\ref{keyvals} lists the
most important keys.
\end{enumerate}

\begin{table}[htb]
\caption{Key Names for \textsf{graphicx} Package.}
\label{keyvals}
\begin{lined}{9cm}
\begin{tabular}{@{}ll}
\texttt{width}& scale graphic to the specified width\\
\texttt{height}& scale graphic to the specified height\\
\texttt{angle}& rotate graphic counterclockwise\\
\texttt{scale}& scale graphic \\
\end{tabular}

\bigskip
\end{lined}
\end{table}

\pagebreak
The following example code may help to clarify things:
\begin{code}
\begin{verbatim}
\begin{figure}
\centering
\includegraphics[angle=90,
                 width=0.5\textwidth]{test}
\caption{This is a test.}
\end{figure}
\end{verbatim}
\end{code}
It includes the graphic stored in the file \texttt{test.eps}. The
graphic is \emph{first} rotated by an angle of 90 degrees and
\emph{then} scaled to the final width of 0.5 times the width of a
standard paragraph.  The aspect ratio is $1.0$, because no special
height is specified.  The width and height parameters can also be
specified in absolute dimensions. Refer to Table~\ref{units} on
page~\pageref{units} for more information. If you want to know more
about this topic, make sure to read \cite{graphics} and \cite{eps}.

\section{Bibliography}
 
Produce a \wi{bibliography} with the \ei{thebibliography}
environment.  Each entry starts with
\begin{lscommand}
\ci{bibitem}\verb|[|\emph{label}\verb|]{|\emph{marker}\verb|}|
\end{lscommand}
The \emph{marker} is then used to cite the book, article or paper
within the document.
\begin{lscommand}
\ci{cite}\verb|{|\emph{marker}\verb|}|
\end{lscommand}
If you do not use the \emph{label} option, the entries will get enumerated
automatically.  The parameter after the \verb|\begin{thebibliography}|
command defines how much space to reserve for the number of labels. In the example below,
\verb|{99}| tells \LaTeX{} to expect that none of the bibliography item numbers will be wider
than the number 99.
\enlargethispage{2cm}
\begin{example}
Partl~\cite{pa} has 
proposed that \ldots 
\begin{thebibliography}{99}
\bibitem{pa} H.~Partl: 
\emph{German \TeX},
TUGboat Volume~9, Issue~1 (1988)
\end{thebibliography}
\end{example}

\chaptermark{Specialities} % w need to fix the damage done by the
                           %bibliography example.
\thispagestyle{fancyplain}


For larger projects, you might want to check out the Bib\TeX{}
program. Bib\TeX{} is included with most \TeX{} distributions. It
allows you to maintain a bibliographic database and then extract the
references relevant to things you cited in your paper. The visual
presentation of Bib\TeX{}-generated bibliographies is based on a style-sheets concept that allows you to create bibliographies following
a wide range of established designs.

\section{Indexing} \label{sec:indexing}
A very useful feature of many books is their \wi{index}. With \LaTeX{}
and the support program \texttt{makeindex},\footnote{On systems not
  necessarily supporting
  filenames longer than 8~characters, the program may be called
  \texttt{makeidx}.} an index can be generated quite easily.  This
introduction will only explain the basic index generation commands.
For a more in-depth view, please refer to \companion.  \index{makeindex
  program} \index{makeidx package}

To enable their indexing feature of \LaTeX{}, the \pai{makeidx} package
must be loaded in the preamble with
\begin{lscommand}
\verb|\usepackage{makeidx}|
\end{lscommand}
\noindent and the special indexing commands must be enabled by putting 
the
\begin{lscommand}
  \ci{makeindex}
\end{lscommand}
\noindent command in the preamble.

The content of the index is specified with
\begin{lscommand}
  \ci{index}\verb|{|\emph{key}@\emph{formatted\_entry}\verb|}|
\end{lscommand}
\noindent commands, where \emph{formatted\_entry} will appear in the index
and \emph{key} will be used for sorting.  The \emph{formatted\_entry} is
optional. If it is missing the \emph{key} will be used. You enter the index
commands at the points in the text that you want the final index entries to
point to.  Table~\ref{index} explains the syntax with several examples.

\begin{table}[!tp]
\caption{Index Key Syntax Examples.}
\label{index}
\begin{center}
\begin{tabular}{@{}lll@{}}
  \textbf{Example} &\textbf{Index Entry} &\textbf{Comment}\\\hline
  \rule{0pt}{1.05em}\verb|\index{hello}| &hello, 1 &Plain entry\\ 
\verb|\index{hello!Peter}|   &\hspace*{2ex}Peter, 3 &Subentry under `hello'\\ 
\verb|\index{Sam@\textsl{Sam}}|     &\textsl{Sam}, 2& Formatted entry\\ 
\verb|\index{Lin@\textbf{Lin}}|     &\textbf{Lin}, 7& Formatted entry\\ 
\verb|\index{Kaese@K\"ase}|     &\textbf{K\"ase}, 33& Formatted entry\\ 
\verb.\index{ecole@\'ecole}.     &\'ecole, 4& Formatted entry\\
\verb.\index{Jenny|textbf}.     &Jenny, \textbf{3}& Formatted page number\\
\verb.\index{Joe|textit}.     &Joe, \textit{5}& Formatted page number
\end{tabular}
\end{center}
\end{table}

When the input file is processed with \LaTeX{}, each \verb|\index|
command writes an appropriate index entry, together with the current
page number, to a special file. The file has the same name as the
\LaTeX{} input file, but a different extension (\verb|.idx|). This
\eei{.idx} file can then be processed with the \texttt{makeindex}
program:

\begin{lscommand}
  \texttt{makeindex} \emph{filename}
\end{lscommand}
The \texttt{makeindex} program generates a sorted index with the same base
file name, but this time with the extension \eei{.ind}. If now the
\LaTeX{} input file is processed again, this sorted index gets
included into the document at the point where \LaTeX{} finds
\begin{lscommand}
  \ci{printindex}
\end{lscommand}

The \pai{showidx} package that comes with \LaTeXe{} prints out all
index entries in the left margin of the text. This is quite useful for
proofreading a document and verifying the index.

Note that the \ci{index} command can affect your layout if not used carefully.

\begin{example}
My Word \index{Word}. As opposed
to Word\index{Word}. Note the
position of the full stop.
\end{example}

\texttt{makeindex} has no clue about characters outside the ASCII range. To
get the sorting correct, use the \verb|@| character as shown in the K\"ase
and \'ecole examples above.

\section{Fancy Headers}
\label{sec:fancy}

The \pai{fancyhdr} package,\footnote{Available from
  \CTAN|macros/latex/contrib/supported/fancyhdr|.} written by
Piet van Oostrum, provides a few simple commands that allow you to
customize the header and footer lines of your document.  Look
at the top of this page, for an application of this
package.

\begin{figure}[!htbp]
\begin{lined}{\textwidth}
\begin{verbatim}
\documentclass{book}
\usepackage{fancyhdr}
\pagestyle{fancy}
% with this we ensure that the chapter and section
% headings are in lowercase.
\renewcommand{\chaptermark}[1]{%
        \markboth{#1}{}}
\renewcommand{\sectionmark}[1]{%
        \markright{\thesection\ #1}}
\fancyhf{}  % delete current header and footer
\fancyhead[LE,RO]{\bfseries\thepage}
\fancyhead[LO]{\bfseries\rightmark}
\fancyhead[RE]{\bfseries\leftmark}
\renewcommand{\headrulewidth}{0.5pt}
\renewcommand{\footrulewidth}{0pt}
\addtolength{\headheight}{0.5pt} % space for the rule
\fancypagestyle{plain}{%
   \fancyhead{} % get rid of headers on plain pages
   \renewcommand{\headrulewidth}{0pt} % and the line
}
\end{verbatim}
\end{lined}
\caption{Example \pai{fancyhdr} Setup.} \label{fancyhdr}
\end{figure}

The tricky problem when customising headers and footers is to get
things like running section and chapter names in there. \LaTeX{}
accomplishes this with a two-stage approach. In the header and footer
definition, you use the commands \ci{rightmark} and \ci{leftmark} to
represent the current section and chapter heading, respectively.
The values of these two commands are overwritten whenever a chapter or
section command is processed. 

For ultimate flexibility, the \verb|\chapter| command and its friends
do not redefine \ci{rightmark} and \ci{leftmark} themselves. They call
yet another command (\ci{chaptermark}, \ci{sectionmark}, or
\ci{subsectionmark}) that is responsible for redefining \ci{rightmark}
and \ci{leftmark}.

If you want to change the look of the chapter
name in the header line, you need only ``renew'' the \ci{chaptermark}
command. \cih{sectionmark}\cih{subsectionmark}

 
Figure~\ref{fancyhdr} shows a possible setup for the \pai{fancyhdr}
package that makes the headers look about the same as they look in
this booklet. In any case, I suggest you fetch the documentation for
the package at the address mentioned in the footnote. 

\section{The Verbatim Package}

Earlier in this book, you got to know the \ei{verbatim}
\emph{environment}.  In this section, you are going to learn about the
\pai{verbatim} \emph{package}. The \pai{verbatim} package is basically
a re-implementation of the \ei{verbatim} environment that works around
some of the limitations of the original \ei{verbatim} environment.
This by itself is not spectacular, but the implementation of the
\pai{verbatim} package added new functionality, which is
why I am mentioning the package here. The \pai{verbatim}
package provides the

\begin{lscommand}
\ci{verbatiminput}\verb|{|\emph{filename}\verb|}|
\end{lscommand}

\noindent command, which allows you to include raw ASCII text into your
document as if it were inside a \ei{verbatim} environment.

As the \pai{verbatim} package is part of the `tools' bundle, you
should find it pre-installed on most systems. If you want to know more
about this package, make sure to read \cite{verbatim}.


\section{Installing Extra Packages}\label{sec:Packages}

Most \LaTeX{} installations come with a large set of pre-installed
style packages, but many more are available on the net. The main
place to look for style packages on the Internet is CTAN (\url{http://www.ctan.org/}).

Packages such as \pai{geometry}, \pai{hyphenat}, and many
others are typically made up of two files: a file with the extension
\texttt{.ins} and another with the extension \texttt{.dtx}. There
will often be a \texttt{readme.txt} with a brief description of the
package. You should of course read this file first.

In any event, once you have copied the package files onto your
machine, you still have to process them in a way that (a) tells your
\TeX\ distribution about the new style package and (b) gives you
the documentation.  Here's how you do the first part:

\begin{enumerate}
\item Run \LaTeX{} on the \texttt{.ins} file. This will
  extract a \eei{.sty} file.
\item Move the \eei{.sty} file to a place where your distribution
  can find it. Usually this is in your \texttt{\ldots/\emph{localtexmf}/tex/latex}
  subdirectory (Windows or OS/2 users should feel free to change the
  direction of the slashes).
\item Refresh your distribution's file-name database. The command
  depends on the \LaTeX distribution you use:
  \TeX{}live -- \texttt{texhash}; web2c -- \texttt{maktexlsr};
  MiK\TeX{} -- \texttt{initexmf -{}-update-fndb} or use the GUI.
\end{enumerate}

\noindent Now extract the documentation from the
\texttt{.dtx} file:

\begin{enumerate}
\item Run \LaTeX\ on the \texttt{.dtx} file.  This will generate a
  \texttt{.dvi} file. Note that you may have to run \LaTeX\
  several times before it gets the cross-references right.
\item Check to see if \LaTeX\ has produced a \texttt{.idx} file
  among the various files you now have.
  If you do not see this file, then the documentation has no index. Continue
  with step~\ref{step:final}.
\item In order to generate the index, type the following:\\
        \fbox{\texttt{makeindex -s gind.ist \textit{name}}}\\
        (where \textit{name} stands for the main-file name without any
    extension).
 \item Run \LaTeX\ on the \texttt{.dtx} file once again. \label{step:next}
    
\item Last but not least, make a \texttt{.ps} or \texttt{.pdf}
  file to increase your reading pleasure.\label{step:final}
  
\end{enumerate}

Sometimes you will see that a \texttt{.glo}
(glossary) file has been produced. Run the following
command between
step~\ref{step:next} and~\ref{step:final}:

\noindent\texttt{makeindex -s gglo.ist -o \textit{name}.gls \textit{name}.glo}

\noindent Be sure to run \LaTeX\ on the \texttt{.dtx} one last
time before moving on to step~\ref{step:final}.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Contents: Chapter on pdfLaTeX
% French original by Daniel Flipo 14/07/2004
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\section{Working with pdf\LaTeX} \label{sec:pdftex}\index{PDF}
\secby{Daniel Flipo}{Daniel.Flipo@univ-lille1.fr}%
PDF is a portable \wi{hypertext} document format. Much as in a web page,
some words in the document are marked as hyperlinks. They link to other
places in the document or even to other documents. If you click
on such a hyperlink you get transported to the destination of the
link. In the context of \LaTeX{}, this means that all occurrences of
\ci{ref} and \ci{pageref} become hyperlinks. Additionally, the table
of contents, the index and all the other similar structures become
collections of hyperlinks.

Most web pages you find today are written in HTML \emph{(HyperText
  Markup Language)}. This format has two significant disadvantages
when writing scientific documents:
\begin{enumerate}
\item Including mathematical formulae into HTML documents is not
  generally supported. While there is a standard for it, most browsers
  used today do not support it, or lack the required fonts.
\item Printing HTML documents is possible, but the results vary widely
  between platforms and browsers. The results are miles removed from
  the quality we have come to expect in the \LaTeX{} world.
\end{enumerate}

There have been many attempts to create translators from \LaTeX{} to
HTML. Some were even quite successful in the sense that they are able
to produce legible web pages from a standard \LaTeX{} input file. But
all of them cut corners left and right to get the job done. As soon as
you start using more complex \LaTeX{} features and external packages
things tend to fall apart. Authors wishing to preserve the unique
typographic quality of their documents even when publishing on the web
turn to PDF \emph{(Portable Document Format)}, which preserves the 
layout of the document and permits hypertext
navigation. Most modern browsers come with plugins that allow the
direct display of PDF documents.

Even though there are DVI and PS viewers for almost every platform, you will find that
\wi{Acrobat Reader} and \wi{Xpdf} for viewing PDF documents 
are more widely deployed\footnote{\url{http://pdfreaders.org}}. So providing PDF versions of your documents will
make them much more accessible to your potential readers.

\subsection{PDF Documents for the Web}

The creation of a PDF file from \LaTeX{} source is very simple,
thanks to the pdf\TeX{} program developed by
H\`an~Th\'{\^e}~Th\`anh. pdf\TeX{} produces PDF output where normal
\TeX{} produces DVI. There is also a pdf\LaTeX{}, which produces
  PDF output from \LaTeX{} sources. \index{pdftex@pdf\TeX}\index{pdftex@pdf\LaTeX}

Both pdf\TeX{} and pdf\LaTeX{} are installed automatically by most
modern \TeX{} distributions, such as te\TeX{}, fp\TeX{},
Mik\TeX, \TeX{}Live and CMac\TeX{}.

To produce a PDF instead of DVI, it is sufficient to replace the
command \texttt{latex file.tex} by
\texttt{pdflatex file.tex}. On systems where \LaTeX{} is not called from the
command line, you may find a special button in the \TeX{} GUI.

Set the paper size with an 
optional documentclass argument such as \texttt{a4paper} or
\texttt{letterpaper}. This works in pdf\LaTeX{} too, but on top of this
pdf\TeX{} also needs to know the physical size of the paper to determine the physical
size of the pages in the pdf file.
\index{paper size}
If you use the
\pai{hyperref} package (see page \pageref{ssec:pdfhyperref}), the
papersize will be adjusted automatically. Otherwise you have to do this
manually by putting the following lines into the preamble of the document:
\begin{code}
\begin{verbatim}
\pdfpagewidth=\paperwidth
\pdfpageheight=\paperheight
\end{verbatim}
\end{code}

The following section will go into more detail regarding the differences
between normal \LaTeX{} and pdf\LaTeX{}. The main differences concern
three areas: the fonts to use, the format of images to include, and the
manual configuration of hyperlinks.

\subsection{The Fonts}

\wi{pdf\LaTeX} can deal with all sorts of fonts (PK bitmaps, TrueType,
\PSi{} type~1\dots) but the normal \LaTeX{} font format, the bitmap PK
fonts produce very ugly results when the document is displayed with Acrobat
Reader. It is best to use \PSi{} Type 1 fonts exclusively to produce
documents that display well. \emph{Modern TeX installations will be setup so that
this happens automatically. Best is to try. If it works for you,
just skip this whole section.}

The Type 1 font set most widely used today is called Latin Modern (LM). 
If you have a recent \TeX{} installation, chances are that you
already have a copy of them installed; all you need to do is to add
\begin{code}
\begin{verbatim}  
\usepackage{lmodern}
\usepackage[T1]{fontenc} 
\usepackage{textcomp}
\end{verbatim}
\end{code}
to the preamble of your document and you are all set for creating excellent
PDF output with full support for the full Latin character set. If you are working with a stripped down
setup, you may have to add the lm fonts explicitly.

For the Russian language you may want to use C1 virtual fonts,
available at \texttt{ftp://ftp.vsu.ru/pub/tex/font-packs/c1fonts}. 
These fonts combine the standard CM type~1                                 
fonts from Bluesky collection and CMCYR type~1 fonts from the Paradissa and
BaKoMa collection, all available on CTAN. Because Paradissa fonts
contain only Russian letters, C1 fonts are                                  
missing other Cyrillic glyphs. 

Another solution is to switch to other \PSi{} type~1 fonts.
Actually, some of them are even included with every copy of Acrobat
Reader. Because these fonts have different character sizes, the text
layout on your pages will change. Generally these other fonts will use more space than
the CM fonts, which are very space-efficient.  Also, the overall visual
coherence of your document will suffer because Times, Helvetica and
Courier (the primary candidates for such a replacement job) have not
been designed to work in harmony in a single document.
 
Two ready-made font sets are available for this purpose:
\pai{pxfonts}, which is based on \emph{Palatino} as its main text body font,
and the \pai{txfonts} package, which is based on \emph{Times}. To use them it is
sufficient to put the following lines into the preamble of your
document:
\begin{code}
\begin{verbatim}
\usepackage[T1]{fontenc}
\usepackage{pxfonts}
\end{verbatim}
\end{code}

You may find lines like
\begin{verbatim}
Warning: pdftex (file eurmo10): Font eur... not found
\end{verbatim}
in the  \texttt{.log} file after compiling your input file. They mean
that some font used in the document has not been found. Make sure you identify and
fix the offending parts of your document, as the resulting PDF document may 
\emph{not display the pages with the missing characters at all}.



\subsection{Using Graphics}
\label{ssec:pdfgraph}

Including graphics into a document works best with the 
\pai{graphicx} package (see page~\pageref{eps}):
\begin{code}
\begin{verbatim}
\usepackage{xcolor,graphicx}
\end{verbatim}
\end{code}
In the sample above I have included the color package, as using color in
documents displayed on the web comes quite naturally.

So much for the good news. The bad news is that graphics in \EPSi{}
format do not work with pdf\LaTeX{}. If you don't define a file extension
in the \ci{includegraphics} command, \pai{graphicx} will go
looking for a suitable file on its own, depending on the setting of
the \emph{driver} option. For \texttt{pdftex} this is
formats \texttt{.png}, \texttt{.pdf}, \texttt{.jpg} and \texttt{.mps} (\MP\index{metapost@\MP})---but \emph{not} \texttt{.eps}.

The simple way out of this problem is to just convert your EPS files
into PDF format using the \texttt{epstopdf} utility found on many
systems. For vector graphics (drawings) this is a great solution. For
bitmaps (photos, scans) this is not ideal, because the PDF format
natively supports the inclusion of PNG and JPEG images. PNG is
good for screenshots and other images with few colours. JPEG is great
for photos, as it is very space-efficient.

It may even be desirable not to draw certain geometric figures, 
but rather describe the figure with a specialized command language, such as
 \MP\index{metapost@\MP}, which can be found in most \TeX{} distributions, and
comes with its own extensive manual.

\subsection{Hypertext Links}
\label{ssec:pdfhyperref}

The \pai{hyperref} package will take care of turning all internal
references of your document into hyperlinks. For this to work
properly some magic is necessary, so you have to put
\verb+\usepackage[pdftex]{hyperref}+ as the \emph{last} command into
the preamble of your document.

Many options are available to customize the behaviour of the
\pai{hyperref} package:
\begin{itemize}
\item either as a comma separated list after the pdftex option\\
  \verb+\usepackage[pdftex]{hyperref}+
\item or on individual lines with the command
  \verb+\hypersetup{+\emph{options}\verb+}+.
\end{itemize}

The only required option is \texttt{pdftex}; the others are
optional and allow you to change the default behaviour of hyperref.\footnote{It
is worth noting that the \pai{hyperref} package is not limited to
work with pdf\TeX{}. It can also be configured to embed PDF-specific
information into the DVI output of normal \LaTeX{}, which then gets put
into the PS file by \texttt{dvips} and is finally picked up by the pdf convertor when turning the PS file into PDF.} In the following
list the default values are written in an upright font.

\begin{flushleft}
\begin{description}
  \item [\texttt{bookmarks (=true,\textit{false})}] show or hide the
    bookmarks bar when displaying the document
  \item [\texttt{unicode (=false,\textit{true})}] allows the use of
    characters of non-latin based languages in Acrobat's bookmarks
  \item [\texttt{pdftoolbar (=true,\textit{false})}] show or hide
    Acrobat's toolbar
  \item [\texttt{pdfmenubar (=true,\textit{false})}] show or hide
    Acrobat's menu
  \item [\texttt{pdffitwindow (=false,\textit{true})}] adjust the
    initial magnification of the PDF when displayed
  \item [\texttt{pdftitle (=\{text\})}] define the title that gets
    displayed in the \texttt{Document Info} window of Acrobat
  \item [\texttt{pdfauthor (=\{text\})}] the name of the PDF's author
  \item [\texttt{pdfnewwindow (=false,\textit{true})}] define whether a new
    window should be opened when a link leads out of the current
    document
  \item [\texttt{colorlinks (=false,\textit{true})}] surround the  
    links by colour frames (\texttt{false}) or colour the text of the links 
    (\texttt{true}). The colour of these links can be configured
    using the following options (default colours are shown):
    \begin{description}
    \item [\texttt{linkcolor (=red)}] colour of internal
      links (sections, pages, etc.)
    \item [\texttt{citecolor (=green)}] colour of
      citation links (bibliography)
    \item [\texttt{filecolor (=magenta)}] colour of file
      links
    \item [\texttt{urlcolor (=cyan)}] colour of URL
      links (mail, web)
    \end{description}
\end{description}
\end{flushleft}

If you are happy with the defaults, use
\begin{code}
\begin{verbatim}
\usepackage[pdftex]{hyperref}
\end{verbatim}
\end{code}

To have the bookmark list open and links in colour
(the \texttt{=true} values are optional):
\begin{code}
\begin{verbatim}
\usepackage[pdftex,bookmarks,colorlinks]{hyperref}
\end{verbatim}
\end{code}

When creating PDFs destined for printing, coloured links are not a
  good thing as they end up in gray in the final output, making it
  difficult to read. Use colour frames, which are not printed:
\begin{code}
\begin{verbatim}
\usepackage{hyperref}
\hypersetup{colorlinks=false}
\end{verbatim}
\end{code}
\noindent or make links black:
\begin{code}
\begin{verbatim}
\usepackage{hyperref}
\hypersetup{colorlinks,%
            citecolor=black,%
            filecolor=black,%
            linkcolor=black,%
            urlcolor=black,%
            pdftex}
\end{verbatim}
\end{code}

When you just want to provide information for the
  \texttt{Document Info} section of the PDF file:
\begin{code}
\begin{verbatim}
\usepackage[pdfauthor={Pierre Desproges},%
            pdftitle={Des femmes qui tombent},%
            pdftex]{hyperref}
\end{verbatim}
\end{code}

\vspace{\baselineskip}

In addition to the automatic hyperlinks for cross references, it is
possible to embed explicit links using
\begin{lscommand}
\ci{href}\verb|{|\emph{url}\verb|}{|\emph{text}\verb|}|
\end{lscommand}

The code
\begin{code}
\begin{verbatim}
The \href{http://www.ctan.org}{CTAN} website.
\end{verbatim}
\end{code}
produces the output ``\href{http://www.ctan.org}{CTAN}'';
a click on the word ``\textcolor{magenta}{CTAN}''
will take you to the CTAN website.

If the destination of the link is not a URL but a local file,
  use the \ci{href} command without the 'http://' bit: 
\begin{verbatim}
  The complete document is \href{manual.pdf}{here}
\end{verbatim}
which produces the text ``The complete document is \textcolor{cyan}{here}''.
A click on the word
``\textcolor{cyan}{here}''
will open the file \texttt{manual.pdf}. (The filename is relative to
the location of the current document).

The author of an article might want her readers to easily send
  email messages by using the \ci{href} command inside the \ci{author}
  command on the title page of the document:
\begin{code}
\begin{verbatim}
\author{Mary Oetiker $<$\href{mailto:mary@oetiker.ch}%
       {mary@oetiker.ch}$>$
\end{verbatim}
\end{code}
Note that I have put the link so that my email address appears not only
in the link but also on the page itself. I did this because the
link\\
\verb+\href{mailto:mary@oetiker.ch}{Mary Oetiker}+\\
would
work well within Acrobat, but once the page is printed the email address
would not be visible anymore.


\subsection{Problems with Links}

Messages like the following:
\begin{verbatim}
! pdfTeX warning (ext4): destination with the same
  identifier (name{page.1}) has been already used,
  duplicate ignored
\end{verbatim}
appear when a counter gets reinitialized, for example by using
the command \ci{mainmatter} provided by the \texttt{book} document class. It
resets the page number counter to~1 prior to the first chapter of the
book. But as the preface of the book also has a page number~1 all
links to ``page 1'' would not be unique anymore, hence the notice
that ``\verb+duplicate+ has been \verb+ignored+.''

The counter measure consists of putting \texttt{plainpages=false} into
the hyperref options. This unfortunately only helps with the page
counter.
An even more radical solution is to use the option\\
\texttt{hypertexnames=false}, but this will cause the page links in
the index to stop working.

\subsection{Problems with Bookmarks}

The text displayed by bookmarks does not always look like you expect
it to look. Because bookmarks are ``just text,'' fewer
characters are available for bookmarks than for normal \LaTeX{} text.
Hyperref will normally notice such problems and put up a warning:
\begin{code}
\begin{verbatim}
Package hyperref Warning: 
Token not allowed in a PDFDocEncoded string:
\end{verbatim}
\end{code}
Work around this problem by providing a text string for
the bookmarks, which replaces the offending text:
\begin{lscommand}
\ci{texorpdfstring}\verb|{|\emph{\TeX{} text}\verb|}{|\emph{Bookmark Text}\verb|}|
\end{lscommand}


Math expressions are a prime candidate for this kind of problem:
\begin{code}
\begin{verbatim}
\section{\texorpdfstring{$E=mc^2$}%
        {E = mc ** 2}}
\end{verbatim}
\end{code}
which turns \verb+\section{$E=mc^2$}+ to ``E = mc ** 2'' in the bookmark area.

If you write your document in Unicode and use the \verb+unicode+ option for
the \pai{hyperref} package to use Unicode characters in bookmarks, this
will give you a much larger selection of characters to pick from when
when using \ci{texorpdfstring}.

\subsection{Source Compatibility Between \LaTeX{} and pdf\LaTeX{}}
\label{sec:pdfcompat}

Ideally your document would compile equally well with \LaTeX{} and
pdf\LaTeX{}. The main problem in this respect is the inclusion of
graphics. The simple solution is to \emph{systematically drop} the
file extension from \ci{includegraphics} commands. They will then
automatically look for a file of a suitable format in the current
directory. All you have to do is create appropriate versions of the
graphics files. \LaTeX{} will look for \texttt{.eps}, and pdf\LaTeX{}
will try to include a file with the extension
\texttt{.png}, \texttt{.pdf}, \texttt{.jpg} or \texttt{.mps}
(in that order).

For the cases where you want to use different code for the
PDF version of your document, simply add the package \pai{ifpdf}%
\footnote{If you want the whole story on why to use this package then
   go to the \TeX{} FAQ under the item
   \url{http://www.tex.ac.uk/cgi-bin/texfaq2html?label=ifpdf}.}  to
your preamble. Chances are that you already have it installed; if not
then you're probably using MiK\TeX{} which will install it for you
automatically the first time you try to use it. This package defines
the special command \ci{ifpdf} that will allow you to write
conditional code easily. In this example, we want the \PSi{}
version to be black and white due to the printing costs but we want
the PDF version for online viewing to be colourful.
\begin{code}
\begin{verbatim}
\RequirePackage{ifpdf} % are we producing PDF ?
\documentclass[a4paper,12pt]{book}
\usepackage[latin1]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{lmodern}
\usepackage[bookmarks, % tune hyperref
            colorlinks,
            plainpages=false]{hyperref}
\usepackage{graphicx}
\ifpdf
  \hypersetup{linkscolor=blue}
\else
  \hypersetup{linkscolors=black}
\fi
\usepackage[english]{babel}
...
\end{verbatim}
\end{code}
In the example above I have included the \pai{hyperref} package even in the
non-PDF version. The effect of this is to make the \ci{href} command
work in all cases, which saves me from wrapping every occurrence into a
conditional statement.

Note that in recent \TeX{} distributions (like \TeX{}Live, Mac\TeX{} and MiK\TeX{}), the
normal \TeX{} program is actually pdf\TeX{} and it will automatically switch
between producing pdf and dvi according to the name it is called with: use the \verb|pdflatex|
command to get pdf output and \verb|latex| for normal dvi output.

\section{Working with \hologo{XeLaTeX}}
\label{sec:xetex}\index{PDF}\index{XeTeX@\hologo{XeTeX}}\index{XeLaTeX@\hologo{XeLaTeX}}

\secby{Axel Kielhorn}{A.Kielhorn@web.de}%
Most of the things said about pdf\LaTeX\ are valid for \hologo{XeLaTeX} as well.

There is a Wiki at \url{http://wiki.xelatex.org/doku.php} that collects
information relevant to \hologo{XeTeX} and \hologo{XeLaTeX}. 

\subsection{The Fonts}

In addition to the normal \texttt{tfm} based fonts, \hologo{XeLaTeX} is able
to use any font known to the operating system. If you have the \texttt{Linux
Libertine} fonts installed, you can simply say

\begin{code}
\begin{verbatim}
\usepackage{fontspec}
\setmainfont[Ligatures=TeX]{Linux Libertine}
\end{verbatim}
\end{code}
%
in the preamble. This will normally detect the italic and bold versions as
well, so \verb|\textit| and \verb|\textbf| will work as usual. When the
font is using OpenType technology you have access to many features which
required switching to a separate font or using virtual fonts in the past.
The main feature is the extended character set; a font may contain Latin,
Greek and Cyrillic characters and the corresponding ligatures.

Many fonts contain at least two kinds of numerals, the normal lining
numerals and so called old style (or lower case) numerals, which partly
extend below the baseline. They may contain proportional numerals (the ``1''
takes less space than the ``0'') or monospaced numerals which are suitable
for tables.

\begin{code}
\begin{verbatim}
\newfontfamily\LLln[Numbers=Lining]{(font)}
\newfontfamily\LLos[Numbers=OldStyle]{(font)}
\newfontfamily\LLlnm[Numbers=Lining,Numbers=Monospaced]{(font)}
\newfontfamily\LLosm[Numbers=OldStyle,Numbers=Monospaced]{(font)}
\end{verbatim}
\end{code}

Almost all OpenType fonts contain the standard ligatures (fl fi ffi) but
there are also some rare or historical ligatures like st, ct and tz. You may
not want to use them in a technical report but they are fine for a novel. To
enable these ligatures use either of the following lines:

\begin{code}
\begin{verbatim}
\setmainfont[Ligatures=Rare]{(font)}
\setmainfont[Ligatures=Historic]{(font)}
\setmainfont[Ligatures=Historic,Ligatures=Rare]{(font)}
\end{verbatim}
\end{code}

Not every font contains both sets of ligature, consult the font
documentation or just try it out. Sometimes these ligatures are language
dependent; for example a ligature used in Polish (fk) is not used in English. You have
to add
\begin{code}
\begin{verbatim}
\setmainfont[Language=Polish]{(font)}
\end{verbatim}
\end{code}
to enable the Polish ligatures.

Some fonts (like the commercial Adobe Garamond Premier Pro) contain
alternative glyphs that are activated by default in \hologo{XeLaTeX}
distributed with \TeX Live~2010\footnote{The behavior has changed with this
version, it was off by default in earlier releases.}. The result is a stylish
``Q'' with a descender reaching below the following ``u''. To disable this
feature you have to define the font with disabled contextuals:

\begin{code}
\begin{verbatim}
\setmainfont[Contextuals=NoAlternate]{(font)}
\end{verbatim}
\end{code}

To learn about fonts in \hologo{XeLaTeX} read the \pai{fontspec} manual.

\subsubsection{Where do I get OpenType fonts?}

If you have \texttt{TeXLive} installed, you already have some at
\url{.../texmf-dist/fonts/opentype}, just install them in your operating
system. This collection does not include \texttt{DejaVu}, which is available
at \url{http://dejavu-fonts.org/}.

Make sure that each font is only installed \emph{once}, otherwise
interesting results may happen.

You can use every font installed on your computer, but remember that other
users may not have these fonts. The Zapfino font used in the \pai{fontspec}
manual is included in Mac OSX, but is not available on Windows
computers.\footnote{A commercial version of the font called Zapfino Extra is
available.} 

\subsubsection{Entering Unicode Characters}

The number of characters in a font has grown but the number of keys on a
regular keyboard has not. So, how do I enter non-ASCII characters?

If you write a large amount of text in a foreign language, you can install a
keyboard for that language and print out the character positions. (Most
operatings system have some sort of virtual keyboard, just make a
screenshot.) 

If you rarely need an exotic character, you can simply pick it in the
character palette.

Some environments (e.\,g. the X Window System) offer many methods to enter
non-ASCII characters. Some editors (e.\,g. Vim and Emacs) offer ways to
enter these characters. Read the manual for the tools you are using.

\subsection{Compatibility Between \hologo{XeLaTeX} and \hologo{pdfLaTeX}}

There are a few things that are different between \hologo{XeLaTeX} and \hologo{pdfLaTeX}.

\begin{itemize}
	\item A \hologo{XeLaTeX} document has to be written in
	Unicode (UTF-8) while \hologo{pdfLaTeX} may use different input encodings.
\item The \pai{microtype} packages does not work with \hologo{XeLaTeX} yet,
	support for character protrusion is already under development.
\item Everything font related has to be reviewed. (Unless you want to stick
	to Latin Modern.) 
\end{itemize}

\section{Creating Presentations}
\label{sec:beamer}
\secby{Daniel Flipo}{Daniel.Flipo@univ-lille1.fr}
You can present the results of your scientific work on a blackboard,
with transparencies, or directly from your laptop using some
presentation software. 

\wi{pdf\LaTeX} combined with the \pai{beamer} class allows you to
create presentations in PDF, looking much like something you might be
able to generate with LibreOffice or PowerPoint if you had a very good day, but much
more portable because PDF readers are available on many more
systems.

The \pai{beamer} class uses \pai{graphicx}, \pai{color} and
\pai{hyperref} with options adapted to screen presentations.
%La figure~\ref{fig:pdfscr} contient un exemple de fichier minimal à
%compiler avec \wi{pdf\LaTeX} et le 
%résultat produit.

% Écran capturé par ImageMagick (man ImageMagick) fonction « import »
% et convertie en jpg toujours par ImageMagick.

\begin{figure}[htbp]
\begin{verbatim}
\documentclass[10pt]{beamer}
\mode<beamer>{%
  \usetheme[hideothersubsections,
            right,width=22mm]{Goettingen}
}

\title{Simple Presentation}
\author[D. Flipo]{Daniel Flipo}
\institute{U.S.T.L. \& GUTenberg}
\titlegraphic{\includegraphics[width=20mm]{USTL}}
\date{2005}

\begin{document}

\begin{frame}<handout:0>
  \titlepage
\end{frame}

\section{An Example}

\begin{frame}
  \frametitle{Things to do on a Sunday Afternoon}
  \begin{block}{One could \ldots}
    \begin{itemize}
      \item walk the dog\dots \pause
      \item read a book\pause
      \item confuse a cat\pause
    \end{itemize}
  \end{block}
  and many other things 
\end{frame}
\end{document}
\end{verbatim}
  \caption{Sample code for the \pai{beamer} class}
  \label{fig:code-beamer}
\end{figure}

When you compile the code presented in figure~\ref{fig:code-beamer}
with \wi{pdf\LaTeX} you get a PDF file with a title page and a second page
showing several items that will be revealed one at a time as you step
though your presentation.

One of the advantages of the beamer class is that it produces a PDF
file that is directly usable without first going through a \PSi{}
stage like \pai{prosper} or requiring additional post processing like
presentations created with the \pai{ppower4} package.

With the \pai{beamer} class you can produce several versions (modes) of your
document from the same input file. The input file may contain special
instructions for the different modes in angular brackets. The
following modes are available:
\begin{description}
\item[beamer] for the presentation PDF
  discussed above.
\item[trans] for transparencies.
\item[handout] for the printed version.
\end{description}
The default mode is \texttt{beamer}, change it by setting a
different mode as a global option, like
\verb|\documentclass[10pt,handout]{beamer}| to print the handouts for
example.

The look of the screen presentation depends on the theme you choose. Pick one of the themes shipped with the beamer class or
create your own. See the beamer class documentation in
\texttt{beameruserguide.pdf} for more information on this.

Let's have a closer look at the code in figure~\ref{fig:code-beamer}.

For the screen version of the presentation \verb|\mode<beamer>| we
have chosen the \emph{Goettingen} theme to show a navigation panel
integrated into the table of contents. The options allow us to choose the
size of the panel (22~mm in this case) and its position (on the right
side of the body text). The option \emph{hideothersubsections}, shows
the chapter titles, but only the subsections of the present
chapter. There are no special settings for \verb|\mode<trans>| and
\verb|\mode<handout>|. They appear in their standard layout.

The commands \verb|\title{}|, \verb|\author{}|, \verb|\institute{}|,
and\\ \verb|\titlegraphic{}| set the content of the title page. The
optional arguments of \verb|\title[]{}| and \verb|\author[]{}|
let you specify a special version of the title and the author
name to be displayed on the panel of the \emph{Goettingen} theme.

The titles and subtitles in the panel are created with normal
\verb|\section{}| and \verb|\subsection{}| commands that you place
\emph{outside} the \ei{frame} environment.

The tiny navigation icons at the bottom of the screen also allow to
navigate the document. Their presence is not dependent on the theme
you choose.

The contents of each slide or screen has to be placed inside a
\ei{frame} environment. There is an optional argument in angular
brackets (\verb|<| and \verb|>|), it allows us to suppress a particular
frame in one of the versions of the presentation. In the example the
first page would not be shown in the handout version due to the
\verb|<handout:0>| argument.

It is highly recommended to set a title for each slide apart from the
title slide. This is done with the command \verb|\frametitle{}|. If a
subtitle is necessary use the \ei{block} environment as shown
in the example. Note that the sectioning commands \verb|\section{}|
and \verb|\subsection{}| do not produce output on the slide proper.

The command \verb|\pause| in the itemize environment lets you reveal
the items one by one. For other presentation effects check out the
commands \verb|\only|, \verb|\uncover|, \verb|\alt| and
\verb|\temporal|. In many place it is possible to use angular brackets to
further customize the presentation.

In any case make sure to read through the beamer class documentation
\texttt{beameruserguide.pdf} to get a complete picture of what is in
store for you. This package is being actively developed, check out their website
to get the latest information. (\href{http://latex-beamer.sourceforge.net/}{http://latex-beamer.sourceforge.net/})



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